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最新の10件

2024-04-04

2024-03-15

2024-01-26

2006-2010

  1. "Omnipotent role of archaeal elongation factor 1 alpha (EF1α) in translational elongation and termination, and quality control of protein synthesis."
    Saito K, Kobayashi K, Wada M, Kikuno I, Takusagawa A, Mochizuki M, Uchiumi T, Ishitani R, Nureki O, Ito K,
    Proc Natl Acad Sci U S A., 107 19242-19247 (2010).
    PubMed: link, PDB: 3AGK
  2. "Crystal structure of a novel JmjC-domain-containing protein, TYW5, involved in tRNA modification."
    Kato M, Araiso Y, Noma A, Nagao A, Suzuki T, Ishitani R, Nureki O,
    Nucleic Acids Res., 39 1576-85 (2010).
    PubMed: link, PDB: 3AL5 3AL6
  3. "Structural basis for mRNA surveillance by archaeal Pelota and GTP-bound EF1α complex."
    Kobayashi K, Kikuno I, Kuroha K, Saito K, Ito K, Ishitani R, Inada T, Nureki O,
    Proc Natl Acad Sci U S A. , 107 17575-17579 (2010).
    PubMed: link, PDB: 3AGJ
  4. "C-terminal domain of archaeal O-phosphoseryl-tRNA kinase displays large-scale motion to bind the 7-bp D-stem of archaeal tRNASec."
    Sherrer RL, Araiso Y, Aldag C, Ishitani R, Ho JM, Söll D, Nureki O,
    Nucleic Acids Res., 39 1034-41 (2010).
    PubMed: link, PDB: 3AM1
  5. "Expanding role of the Jumonji C domain as an RNA hydroxylase."
    Noma A, Ishitani R, Kato M, Nagao A, Nureki O, Suzuki T,
    J Biol Chem., 285 34503-7 (2010).
    PubMed: link
  6. "Structure of an archaeal non-discriminating glutamyl-tRNA synthetase: a missing link in the evolution of Gln-tRNAGln formation."
    Nureki O, O'Donoghue P, Watanabe N, Ohmori A, Oshikane H, Araiso Y, Sheppard K, S醇rll D, Ishitani R,
    Nucleic Acids Res., 38 7286-97 (2010).
    PubMed: link
  7. "Editing mechanism of aminoacyl-tRNA synthetases operates by a hybrid ribozyme/protein catalyst."
    Hagiwara Y, Field MJ, Nureki O, Tateno M,
    J Am Chem Soc. , 132 2751-2758 (2010).
    PubMed: link
  8. "Molecular mechanisms underlying the early stage of protein translocation through the Sec translocon."
    Mori T, Ishitani R, Tsukazaki T, Nureki O, Sugita Y,
    Biochemistry, 49 945-950 (2010).
    PubMed: link
  9. "Structural basis for translational fidelity ensured by transfer RNA lysidine synthetase"
    Nakanishi K, Bonnefond L, Kimura S, Suzuki T, Ishitani R, Nureki O,
    Nature, 461 1144-1148 (2009).
    PubMed: link, PDB: 3A2K 3HJ7
  10. "Structure of a tRNA-dependent kinase essential for selenocysteine decoding"
    Araiso Y, Sherrer RL, Ishitani R, Ho JM, S�ll D, Nureki O,
    Proc Natl Acad Sci U S A, 106 16215-16220 (2009).
    PubMed: link, PDB: 3A4N
  11. "Mg2+-dependent gating of bacterial MgtE channel underlies Mg2+ homeostasis"
    Hattori M, Iwase N, Furuya N, Tanaka Y, Tsukazaki T, Ishitani R, Maguire ME, Ito K, Maturana A, Nureki O,
    EMBO J, 28 3602-3612 (2009).
    PubMed: link, PDB: 2ZY9
  12. "Mechanism for the definition of elongation and termination by the class II CCA-adding enzyme."
    Toh Y, Takeshita D, Numata T, Fukai S, Nureki O, Tomita K.,
    EMBO J., 28 3353-3365 (2009).
    PubMed: link, PDB: 3H37 3H38 3H39 3H3A
  13. "Structural Basis of Novel Interactions Between the Small-GTPase and GDI-like Domains in Prokaryotic FeoB Iron Transporter."
    Hattori M, Jin Y, Nishimasu H, Tanaka Y, Mochizuki M, Uchiumi T, Ishitani R, Ito K, Nureki O.,
    Structure., 17 1345-55 (2009).
    PubMed: link, PDB: 3A1S 3A1T 3A1U 3A1V 3A1W
  14. "Structural basis of AdoMet-dependent aminocarboxypropyl transfer reaction catalyzed by tRNA-wybutosine synthesizing enzyme, TYW2."
    Umitsu M, Nishimasu H, Noma A, Suzuki T, Ishitani R, Nureki O.,
    Proc Natl Acad Sci U S A., 106 15616-21 (2009).
    PubMed: link, PDB: 3A27 3A26 3A25
  15. "Crystallization and preliminary X-ray diffraction analysis of the truncated cytosolic domain of the iron transporter FeoB."
    Jin Y, Hattori M, Nisimasu H, Ishitani R, Nureki O.,
    Acta Crystallogr Sect F Struct Biol Cryst Commun., 65(Pt 8) 784-7 (2009).
    PubMed: link
  16. "Structural modelling of the complex of leucyl-tRNA synthetase and mis-aminoacylated tRNA(Leu)."
    Hagiwara Y, Nureki O, Tateno M.,
    FEBS Lett., [Epub ahead of print] (2009).
    PubMed: link
  17. "The structure of alanyl-tRNA synthetase with editing domain."
    Sokabe M, Ose T, Nakamura A, Tokunaga K, Nureki O, Yao M, Tanaka I.,
    Proc Natl Acad Sci U S A , 106 11028-11033 (2009).
    PubMed: link
  18. "Tuberous sclerosis tumor suppressor complex-like complexes act as GTPase-activating proteins for Ral GTPases."
    Shirakawa R, Fukai S, Kawato M, Higashi T, Kondo H, Ikeda T, Nakayama E, Okawa K, Nureki O, Kimura T, Kita T, Horiuchi H.,
    J Biol Chem. , 284 21580-8 (2009).
    PubMed: link
  19. "Identification of the nucleophilic factors and the productive complex for the editing reaction by leucyl-tRNA synthetase."
    Hagiwara Y, Nureki O, Tateno M.,
    FEBS Lett, 583(12) 1901-8 (2009).
    PubMed: link
  20. "Conserved cysteine residues of GidA are essential for biogenesis of 5-carboxymethylaminomethyluridine at tRNA anticodon."
    Osawa T, Ito K, Inanaga H, Nureki O, Tomita K, Numata T.,
    Structure, 17(5) 713-24. (2009).
    PubMed: link
  21. "Crystal structure of the cytosolic domain of the cation diffusion facilitator family protein."
    Higuchi T, Hattori M, Tanaka Y, Ishitani R, Nureki O.,
    Proteins, 76(3) 768-71 (2009).
    PubMed: link, PDB: 2ZZT
  22. "Atomic structure of a folate/FAD-dependent tRNA T54 methyltransferase."
    Nishimasu H, Ishitani R, Yamashita K, Iwashita C, Hirata A, Hori H, Nureki O,
    Proc Natl Acad Sci U S A, 106(20) 8180-5 (2009).
    PubMed: link, PDB: 3G5Q 3G5R 3G5S
  23. "Structural basis of tRNA modification with CO2 fixation and methylation by wybutosine synthesizing enzyme TYW4."
    Suzuki Y, Noma A, Suzuki T, Ishitani R, Nureki O,
    Nucleic Acids Res., 37(9) 2910-25 (2009).
    PubMed: link, PDB: 2ZW9 2ZWA 2ZZK
  24. "Pyrrolysyl-tRNA synthetase tRNAPyl structure reveals the molecular basis of orthogonality."
    Nozawa K, O'Donoghue P, Gundllapalli S, Araiso Y, Ishitani R, Umehara T, Soll D and Nureki O,
    Nature, 457(7233) 1163-1167 (2009).
    PubMed: link, PDB: 2ZNI 2ZNJ
  25. "Crystallization and preliminary X-ray diffraction analysis of GCIP/HHM transcriptional regulator."
    Seto A, Ikushima H, Suzuki T, Sato Y, Fukai S, Yuki K, Miyazawa K, Miyazono K, Ishitani R and Nureki O,
    Acta Crystallogr Sect. F Struct. Biol. Cryst. Commun., 65(Pt 1) 21-24 (2009).
    PubMed: link
  26. "Conformational transition of Sec machinery inferred from bacterial SecYE structures."
    Tsukazaki T, Mori H, Fukai S, Ishitani R, Mori T, Dohmae N, Perederina A, Sugita Y, Vassylyev D, Ito K and Nureki O,
    Nature, 455 988-991 (2008).
    PubMed: link, PDB: 2ZJS 2ZQP
  27. "Mg2+-sensing mechanism of Mg2+ transporter MgtE probed by molecular dynamics study."
    Ishitani R, Sugita Y, Dohmae N, Furuya N, Hattori M and Nureki O.,
    Proc Natl Acad Sci U S A, 105(40) 15393-15398 (2008).
    PubMed: link
  28. "Structural basis for specific cleavage of Lys 63-linked polyubiquitin chains."
    Sato Y, Yoshikawa A, Yamagata A, Mimura H, Yamashita M, Ookata K, Nureki O, Iwai K, Komada M and Fukai S.,
    Nature, 455 358-362 (2008).
    PubMed: link, PDB: 2ZNV 2ZNR
  29. "Molecular basis for maintenance of fidelity during the CCA-adding reaction by a CCA-adding enzyme."
    Toh Y, Numata T, Watanabe K, Takeshita D, Nureki O and Tomita K.,
    EMBO J., 27 1944-1952 (2008).
    PubMed: link, PDB: 2ZH1 2ZH2 2ZH3 2ZH4 2ZH5 2ZH6 2ZH7 2ZH8 2ZH9 2ZHA 2ZHB
  30. "Structure, dynamics, and function of RNA modification enzymes."
    Ishitani R, Yokoyama S and Nureki O.,
    Curr Opin Struct Biol., 18(3) 330-339. (2008).
    PubMed: link
  31. "Biochemical characterization of the Rho GTPase-regulated actin assembly by diaphanous-related formins, mDia1 and Daam1, in platelets."
    Higashi T, Ikeda T, Shirakawa R, Kondo H, Kawato M, Horiguchi M, Okuda T, Okawa K, Fukai S, Nureki O, Kita T and Horiuchi H.,
    J Biol Chem., 283(13) 8746-8755. (2008).
    PubMed: link
  32. "Regulation of Platelet Dense Granule Secretion by the Ral GTPase-Exocyst Pathway."
    Kawato M, Shirakawa R, Kondo H, Higashi T, Ikeda T, Okawa K, Fukai S, Nureki O, Kita T and Horiuchi H.,
    J. Biol. Chem., 283(1) 166-174 (2008).
    PubMed: link
  33. "Structural insights into RNA-dependent eukaryal and archaeal selenocysteine formation."
    Araiso Y, Palioura S, Ishitani R, Sherrer RL, O'Donoghue P, Yuan J, Oshikane H, Domae N, Defranco J, Soll D and Nureki O.,
    Nucleic Acids Res., 36(4) 1187-1199. (2008).
    PubMed: link, PDB: 2Z67
  34. "Use of layer silicate for protein crystallization: Effects of Micromica and chlorite powders in hanging drops."
    Takehara M, Ino K, Takakusagi Y, Oshikane H, Nureki O, Ebina T, Mizukami F and Sakaguchi K.,
    Anal. Biochem., 373(2) 322-329 (2008).
    PubMed: link
  35. "Animated crystallography of genetic code translation."
    Tomita K, Numata T, Fukai S, Ishitani R and Nureki O.,
    Nucleic Acids Symp. Ser. (Oxf), 51 101-102 (2007).
    PubMed: link
  36. "Crystal structure of human DAAM1 formin homology 2 domain."
    Yamashita M, Higashi T, Suetsugu S, Sato Y, Ikeda T, Shirakawa R, Kita T, Takenawa T, Horiuchi H, Fukai S and Nureki O.,
    Genes Cells., 12(11) 1255-65 (2007).
    PubMed: link, PDB: 2Z6E
  37. "Crystallization and preliminary X-ray diffraction analysis of the cytosolic domain of a cation diffusion facilitator family protein."
    Hattori M, Tanaka Y, Ishitani R and Nureki O.,
    Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 63(Pt 9) 771-773 (2007).
    PubMed: link
  38. "Anticodon recognition and discrimination by the alpha-helix cage domain of class I lysyl-tRNA synthetase."
    Levengood JD, Roy H, Ishitani R, Söll D, Nureki O and Ibba M.,
    Biochemistry., 46(39) 11033-11038 (2007).
    PubMed: link
  39. "Crystal Structure of the Radical SAM Enzyme Catalyzing Tricyclic Modified Base Formation in tRNA."
    Suzuki Y, Noma A, Suzuki T, Senda M, Senda T, Ishitani R and Nureki O.,
    J. Mol. Biol., 372(5) 1204-1214 (2007).
    PubMed: link, PDB: 2Z2U
  40. "Crystal structure of the MgtE Mg2+ transporter."
    Hattori M, Tanaka Y, Fukai S, Ishitani R and Nureki O.,
    Nature, 448 1072-1075 (2007).
    PubMed: link, PDB: 2YVX 2YVY 2YVZ
  41. "Crystallization and preliminary X-ray diffraction analysis of the full-length Mg2+ transporter MgtE."
    Hattori M, Tanaka Y, Fukai S, Ishitani R and Nureki O.,
    Acta Crystallograph Sect F Struct Biol Cryst Commun. , 63(Pt 8) 682-684 (2007).
    PubMed: link
  42. "Crystallization and preliminary X-ray diffraction analysis of the cytosolic domain of the Mg2+ transporter MgtE."
    Tanaka Y, Hattori M, Fukai S, Ishitania R and Nureki O.,
    Acta Crystallograph Sect F Struct Biol Cryst Commun, 63(Pt 8) 678-681 (2007).
    PubMed: link
  43. "Crystal structure of the Sec4p·Sec2p complex in the nucleotide exchanging intermediate state "
    Sato Y, Fukai S, Ishitani R and Nureki O,
    PNAS, 104 (19) 8305-8310 (2007).
    PubMed: link, PDB: 2EQB
  44. "Asymmetric Coiled-Coil Structure with Guanine Nucleotide Exchange Activity."
    Sato Y, Shirakawa R, Horiuchi H, Dohmae N, Fukai S and Nureki O,
    Structure, 15 245-252 (2007).
    PubMed: link, PDB: 2E7S
  45. "Crystal structures of leucyl/phenylalanyl-tRNA-protein transferase and its complex with an aminoacyl-tRNA analog."
    Suto K, Shimizu Y, Watanabe K, Ueda T, Fukai S, Nureki O and Tomita K.,
    EMBO J., 24 5942-5950 (2006).
    PubMed: link, PDB: 2DPT 2DPS
  46. "Complete crystallographic analysis of the dynamics of CCA sequence addition."
    Tomita K, Ishitani R, Fukai S and Nureki O.,
    Nature, 7114 956-960 (2006).
    PubMed: link, PDB: 2DVI 2DRB 2DRA 2DR9 2DR8 2DR7 2DR5
  47. "Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of pyrrolysyl-tRNA synthetase from the methanogenic archaeon Methanosarcina mazei."
    Yanagisawa T, Ishii R, Fukunaga R, Nureki O and Yokoyama S.,
    Acta Crystallograph Sect F Struct Biol Cryst Commun., Pt 10 1031-1033 (2006).
    PubMed: link
  48. "Functional categorization of the conserved basic amino acid residues in TrmH [tRNA (Gm18) methyltansferase] enzymes."
    Watanabe K, Nureki O, Fukai S, Endo Y and Hori H,
    J. Biol. Chem., 45 34630-34639 (2006).
    PubMed: link
  49. "Structural basis of RNA-dependent recruitment of glutamine to the genetic code"
    Oshikane H, Sheppard K, Fukai S, Nakamura Y, Ishitani R, Numata T, Sherrer RL, Feng L, Schmitt E, Panvert M, Blanquet S, Mechulam Y, Soll D and Nureki O.,
    Science, 312 1950-1954 (2006).
    PubMed: link, PDB: 2D6F
  50. "Snapshots of tRNA sulphuration via an adenylated intermediate"
    Numata T, Ikeuchi Y, Fukai S, Suzuki T and Nureki O.,
    Nature, 442 419-424 (2006).
    PubMed: link, PDB: 2DEU 2DET 2DER
  51. "Purification, crystallization and preliminary X-ray diffraction of SecDF, a translocon-associated membrane protein, from Thermus thermophilus"
    Tsukazaki T, Mori H, Fukai S, Numata T, Perederina A, Adachi H, Matsumura H, Takano K, Murakami S, Inoue T, Mori Y, Sasaki T, Vassylyev DG, Nureki O and Ito K.,
    Acta Crystallographica, F., 62 376-380 (2006).
    PubMed: link
  52. "Crystallization and preliminary X-ray analysis of tRNA thiolation enzyme MnmA from Escherichia Coli complexed with tRNAGlu"
    Numata T, Ikeuchi Y, Fukai S, Adachi H, Matsumura H, Takano K, Murakami S, Inoue T, Mori Y, Sasaki T, Suzuki T and Nureki O.,
    Acta Crystallographica F., 62 368-371 (2006).
    PubMed: link
  53. "Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa"
    Sengoku T, Nureki O, Nakamura A, Kobayashi S and Yokoyama S.,
    Cell, 125 287-300 (2006).
    PubMed: link, PDB: 2DB3
  54. "Structural basis for sulfur relay to RNA mediated by heterohexameric TusBCD complex"
    Numata T, Fukai S, Ikeuchi Y, Suzuki T and Nureki O.,
    Structure, 14 357-366 (2006).
    PubMed: link, PDB: 2D1P